PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G036600.1.p
Common NameGLYMA_01G036600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 242aa    MW: 27314.9 Da    PI: 7.5948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G036600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000217799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C k F ++  L  H++ H
  Glyma.01G036600.1.p 77 FECQYCYKEFANSQALGGHQNAH 99
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-572103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-673104No hitNo description
PROSITE profilePS5015711.5177104IPR007087Zinc finger, C2H2
PfamPF139126.8E-677101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEKDIIHLSP TWDGDNGNST EKRLRLFGFE LNPSKDGYAK ESGEGDESVN SSNSVSSGGD  60
KTVQEKPSAK DSDERKFECQ YCYKEFANSQ ALGGHQNAHK KERMKKKRLQ LQSINRYLQH  120
PFQSKHGFAH PSDTPWFYDP STYNNSEFTL SEEPQISFNS NVLDANFSCD QKSSWYSLAS  180
HPSNSQQDTC MFTFSNASNN SPFIFKPCHF PASNQSHKSK ALDLQLGLNL QSNTRSSLRR  240
M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G036600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918140.0BT091814.1 Soybean clone JCVI-FLGm-8L2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237195.20.0C2H2-type zinc finger domain-containing protein
RefseqXP_028230079.10.0zinc finger protein 5-like
TrEMBLA0A445LYH81e-179A0A445LYH8_GLYSO; Zinc finger protein GIS3
TrEMBLI1J5E71e-179I1J5E7_SOYBN; Uncharacterized protein
STRINGGLYMA01G04310.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Representative plantOGRP1020968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.18e-14C2H2 family protein