PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G049100.2.p
Common NameGLYMA_01G049100, LOC100784670
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 344aa    MW: 38078 Da    PI: 6.4041
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G049100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-281568155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rF+ea +qLGG++ +tPk+++++m+++gLtl+h+kSHLQkYRl
  Glyma.01G049100.2.p 15 KPRLKWTPELHRRFIEATNQLGGAD-TTPKSLMRVMGIPGLTLYHLKSHLQKYRL 68
                         79*******************9999.9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6811271IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-281369IPR009057Homeodomain-like
SuperFamilySSF466892.15E-161469IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-201569IPR006447Myb domain, plants
PfamPF002492.6E-71767IPR001005SANT/Myb domain
PfamPF143796.6E-23112158IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDPQSMHFVL STDSKPRLKW TPELHRRFIE ATNQLGGADT TPKSLMRVMG IPGLTLYHLK  60
SHLQKYRLGK SQELETCSDN KQEDYIETKS SSDGHCSREI SIGAQNQLTE NMQIAQALQM  120
QMEVQRKLHE QIEVQKHLQL RIEAQGKYLQ SVLKKAQEAL AGYNSSPVGI ELTKAELSQL  180
VTIINNACPS SPISELTETR GLSLSCGERK RDRGTMCSLE SSLTSSESSG RKEEKQPMEE  240
IVEFKSSINV SLQLPLMEIL TEDKASNGGS SNEASGRKRS ATAAESDDGS CVVEQPCGKR  300
CGNKLRKAKL SEMLDLNSQC QSDMDSTSSK TLDLNCSLNF WEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-171570157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-171570157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-171570157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-171570157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-171570258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G049100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353790.0AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573113.10.0myb family transcription factor PHL8 isoform X3
RefseqXP_028230861.10.0myb family transcription factor PHL8-like isoform X2
SwissprotF4I2741e-76PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A0R0L6Z40.0A0A0R0L6Z4_SOYBN; Uncharacterized protein
STRINGGLYMA01G05920.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.18e-76G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]