PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G053800.1.p
Common NameGLYMA_01G053800, LOC100127369
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 456aa    MW: 49576.6 Da    PI: 7.5577
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G053800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.3e-33175231259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers  +++v+ i+Y+geHnh+
  Glyma.01G053800.1.p 175 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCSVKKKVERSL-EGHVTAIIYKGEHNHQ 231
                          8****************************************.***************8 PP
2WRKY106.91e-33342400159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.01G053800.1.p 342 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 400
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-29161233IPR003657WRKY domain
SuperFamilySSF1182901.44E-25172233IPR003657WRKY domain
SMARTSM007741.0E-35174232IPR003657WRKY domain
PROSITE profilePS5081123.169175233IPR003657WRKY domain
PfamPF031064.8E-25175231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37327402IPR003657WRKY domain
SuperFamilySSF1182906.67E-30334402IPR003657WRKY domain
PROSITE profilePS5081139.18337402IPR003657WRKY domain
SMARTSM007741.1E-39342401IPR003657WRKY domain
PfamPF031062.8E-26343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAGGGGGDRP PWKEAAPPRP TITLPPRSGS METLFNGGFS PGPMTLLSGF LGDGDDGKSF  60
SQLLAGAMAS PVAGAVADGV MDSPSLFSPS QVSFGMTHQQ ALTQVSAQAS QANSNMHIQA  120
EHSLTQASAA TFNTTQQLIP PLNADSWATM TESADHSHSE QRLQSSLLNV DKPADDGYNW  180
RKYGQKQVKG SEFPRSYYKC THPNCSVKKK VERSLEGHVT AIIYKGEHNH QRPHPNKRSK  240
DTMTSNANSN IQGSVDSTYQ GTTTNSMSKM DPESSQATAD HLSGTSESEE VGDHETEVDE  300
KNVEPDPKRR KAEVSQSDPA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP  360
YPRSYYKCTT QGCNVRKHVE RASTDPKAVI TTYEGKHNHD VPAAKNNSHT MASNTASQLK  420
SHNTNPEKHN FGSRGMGGNE QQPVARLRLK EEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-43175403878Probable WRKY transcription factor 4
2lex_A6e-43175403878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.74670.0epicotyl| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G053800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195570.0EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517814.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-151WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLI1J5V40.0I1J5V4_SOYBN; Uncharacterized protein
STRINGGLYMA01G06550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-145WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]