PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G056900.1.p
Common NameGLYMA_01G056900, LOC100805520
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 523aa    MW: 58943.8 Da    PI: 8.9767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G056900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038465487123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C+k F++   L  H r+H
  Glyma.01G056900.1.p 465 HECPICNKIFRSGQALGGHKRSH 487
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-43458IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.143658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9513663IPR007087Zinc finger, C2H2
PfamPF139121.7E-63659IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SMARTSM003550.21133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473133160IPR007087Zinc finger, C2H2
SuperFamilySSF576673.87E-8134155No hitNo description
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
PfamPF139125.5E-7135157IPR007087Zinc finger, C2H2
SuperFamilySSF576673.87E-8460487No hitNo description
PfamPF139122.3E-11464487IPR007087Zinc finger, C2H2
SMARTSM003550.018465487IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702465487IPR007087Zinc finger, C2H2
PROSITE patternPS000280467487IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MCIHTTQSLR ILRFHCSRYS LLMMMSYQSM EETRKFVCKY CSKRFPCGKS LGGHIRTHMM  60
SEYHHHSALA NEERNNNNNN AANANAMFKF DGGRKRKRDL GSEENGNNNY GLRENPKKTT  120
RFVHSNATLQ LDKFCKECGK GFPSLKALCG HMACHSEKDK RRFATEKQKL VMDSQSDTET  180
SSAPRRSKGM KFKTLSNNNQ PQSSSVSEVE QEQEEVARCL MMLSKDSSYK GRFALLTESS  240
DNNSIVITKS PSLETKVTTM INGYGKNSMS SAYVERKLEL EQNKDLKFKS AEVGYDSDNS  300
DSGYFRYGPK SDVSNDDGFF RNEVKSSKVG YLNGFDQEYD VESRKVLSRG RSRSSEFNEF  360
VLEDWENYDR EDGVAARTFD SKKFKKSNYD DSLGQNLGGV STRKYECLTN EMYNGCSDDS  420
AYESDENSTD TDSYPAPKAH SNRNNLSVQK GKKKKKLKSK KSKAHECPIC NKIFRSGQAL  480
GGHKRSHFVG GSEENTLVIR PSAPPAAVPC LIDLNLPAPV DE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451460KKKKKLKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G056900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517826.20.0uncharacterized protein LOC100805520
RefseqXP_028231491.10.0uncharacterized protein LOC114411937
TrEMBLA0A445LZB40.0A0A445LZB4_GLYSO; Uncharacterized protein
TrEMBLK7K2130.0K7K213_SOYBN; Uncharacterized protein
STRINGGLYMA01G06880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-80C2H2-like zinc finger protein