PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G064200.2.p
Common NameLOC100819745
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26551.3 Da    PI: 9.3135
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G064200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Glyma.01G064200.2.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                         79***********************************************86 PP
2K-box83.64.3e-2875169195
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y++++ ++++++++ +++ e+++Lk++i+ Lqr++Rh++GedL s+slkeLq+LeqqL++++k+iR+++++++ eq + l kk ke +++
  Glyma.01G064200.2.p  75 YAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLDTAIKNIRTRREKMIQEQNNILAKKIKEKEQA 164
                          567788888899999***************************************************************999999998887 PP

                K-box  91 nkaLr 95 
                            +  
  Glyma.01G064200.2.p 165 VAQQA 169
                          66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.702161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-33292IPR002100Transcription factor, MADS-box
CDDcd002652.08E-41279No hitNo description
PRINTSPR004048.5E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-323859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2285163IPR002487Transcription factor, K-box
PROSITE profilePS5129714.41288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERH ERYAYAERQL VANDSETQGN WTIEYTRLKA KIDLLQRNHR HYMGEDLASM  120
SLKELQSLEQ QLDTAIKNIR TRREKMIQEQ NNILAKKIKE KEQAVAQQAA QWEQPNYRVD  180
TSFMPQQQPL RTSLNIGGNN YNQEAAPELG RNGLDLTLEP LYSCHLGCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21173172MEF2C
5f28_B1e-21173172MEF2C
5f28_C1e-21173172MEF2C
5f28_D1e-21173172MEF2C
6byy_A1e-21174173MEF2 CHIMERA
6byy_B1e-21174173MEF2 CHIMERA
6byy_C1e-21174173MEF2 CHIMERA
6byy_D1e-21174173MEF2 CHIMERA
6bz1_A1e-21174173MEF2 CHIMERA
6bz1_B1e-21174173MEF2 CHIMERA
6bz1_C1e-21174173MEF2 CHIMERA
6bz1_D1e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G064200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953620.0BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516454.11e-160truncated transcription factor CAULIFLOWER A
RefseqXP_028232021.11e-160truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-111AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A368UJX31e-170A0A368UJX3_SOYBN; Uncharacterized protein
STRINGGLYMA01G08150.11e-160(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]