PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G076900.1.p
Common NameGLYMA_01G076900, LOC100798775
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 459aa    MW: 49172.7 Da    PI: 8.7882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G076900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15275320555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Glyma.01G076900.1.p 275 HNQSERKRRDKINQRMKTLQKLVPNS-----SKSDKASMLDEVIEYLKQLQ 320
                          9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-18268331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.504270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17275326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-17275324No hitNo description
PfamPF000107.6E-13275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-17276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSQCVPSWDV EDNPPPSRVS LRSNSNSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP  60
VKPPTAVTNK YTWEKPRASG TLESIVNQVT SFPHRGKPTP LNGGGGGGVY GNFRVPWFDP  120
HATATTTNTV TMDALVPCSN REQSKQGMES VPGGTCMVGC STRVGSCCGG KGAKGHEATG  180
RDQSVSGSAT FGRDSKHVTL DTCDREFGVG FTSTSINSLE NTSSAKHCTK TTTVDDHDSV  240
SHSKPVGEDQ DEGKKKRANG KSSVSTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS  300
SKSDKASMLD EVIEYLKQLQ AQLQMINRIN MSSMMLPLTM QQQLQMSMMS PMGMGLGMGM  360
GMGMGMGMDM NSMNRAHIPG IPPVLHPSAF MPMAASWDAA AAAGGGDRLQ GTPANVMPDP  420
LSTFFGCQSQ PMTIDAYSRL AAMYQQLHQP PPASGSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283ERKRRD
2279284RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.223010.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G076900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350520.0AC235052.1 Glycine max strain Williams 82 clone GM_WBb0119P14, complete sequence.
GenBankAC2352520.0AC235252.1 Glycine max strain Williams 82 clone GM_WBb0036F08, complete sequence.
GenBankAC2352730.0AC235273.1 Glycine max strain Williams 82 clone GM_WBb0046P21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516808.10.0transcription factor UNE10
RefseqXP_028232966.10.0transcription factor UNE10-like
SwissprotQ8GZ381e-107UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A445M0930.0A0A445M093_GLYSO; Transcription factor UNE10
TrEMBLI1J6F80.0I1J6F8_SOYBN; Uncharacterized protein
STRINGGLYMA01G15930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-105bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]