PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G079500.1.p
Common NameGLYMA_01G079500, LOC100792973
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 745aa    MW: 81588.6 Da    PI: 5.563
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G079500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.22.3e-953887432374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l+   +      ++ + s++    ++ a+k fse+sP+l
  Glyma.01G079500.1.p 388 TEQLFKAAELIDAGNLELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHP--NANN---SSFTFSPTGLLLKIGAYKSFSEISPVL 472
                          689**************************************************9..3333...44444444599**************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          +f+++t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++++p+l+iT+++sp+++++ el+  +e L+++A el+++fe ++l
  Glyma.01G079500.1.p 473 QFANFTCNQALLEAVEGFDRIHIIDFDIGLGGQWSSFMQELALRNGSAPELKITAFVSPSHHDEIELSFSQESLKQYAGELHMSFELEIL 562
                          *****************************************************************************************9 PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                            ++l++   +   ++  Ea++Vn+ +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys l++sl
  Glyma.01G079500.1.p 563 SLESLNSA-SWPQPLRDCEAVVVNMPIGSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESL 645
                          66666665.44456799**********888877......677788********************************************* PP

                 GRAS 272 .eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                           ++++  + +  +++E+ +l+++ +++v  ++      +e++  W++ l ++GF+p+++s+++++qa++l+++++s+g++ve+++ slvl
  Glyma.01G079500.1.p 646 dAVNV--HPDVLQMIEKYYLQPSMEKLVLGRHGL----QERALPWKNLLLSSGFSPLTFSNFTESQAECLVQRTPSKGFHVEKRQSSLVL 729
                          55554..5578899**************998887....88899*********************************************** PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          +W+++ L+svS Wr
  Glyma.01G079500.1.p 730 CWQRKDLISVSTWR 743
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.568361723IPR005202Transcription factor GRAS
PfamPF035148.0E-93388743IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MKAVPLPFQE FRGNGVLDFA SVAAVSDSLL LPQQEQFLQR WNPQRENFCY VGIEPAVSGL  60
DLKRKTSSPP TSSSTLSSSR ASSGGCGGWG SADSTTGAAT ATVAEKENNP PQGGLEVVGQ  120
ARCGLGMEDW ESVLSESPGE DHSILKLIMG DIEDPSVGLT KLLQGGSASQ DVELNGLGVG  180
FGLVNQSSVL DPIPSVNFVS SSIDPSGPGN CADFPFNSHS NVSPNVPSVG SGLNPNPTGF  240
PTSASNLSQV SLPQGVFQPQ QQQHQPIEPL DEKLQVLNPQ FILYQNQSQF MPNPGLVLPL  300
TYAQLQEHHQ LLPQPPAKRL NCGPNYQVPK TPFLDSGQEL LLRRQQQQLQ LLPHHLLQRP  360
SMVVAPKQKM VNSGSEDLAT HQLQQAITEQ LFKAAELIDA GNLELAHGIL ARLNHQLSPI  420
GKPFQRAAFY FKEALQLLLH PNANNSSFTF SPTGLLLKIG AYKSFSEISP VLQFANFTCN  480
QALLEAVEGF DRIHIIDFDI GLGGQWSSFM QELALRNGSA PELKITAFVS PSHHDEIELS  540
FSQESLKQYA GELHMSFELE ILSLESLNSA SWPQPLRDCE AVVVNMPIGS FSNYPSYLPL  600
VLRFVKQLMP KIVVTLDRSC DRTDAPFPQH LIFALQSYSG LLESLDAVNV HPDVLQMIEK  660
YYLQPSMEKL VLGRHGLQER ALPWKNLLLS SGFSPLTFSN FTESQAECLV QRTPSKGFHV  720
EKRQSSLVLC WQRKDLISVS TWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2940574321375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.210470.0cotyledon| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G079500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573232.10.0scarecrow-like protein 27
RefseqXP_028223290.10.0scarecrow-like protein 27
TrEMBLA0A0B2RI520.0A0A0B2RI52_GLYSO; Scarecrow-like protein 6
TrEMBLK7K2L00.0K7K2L0_SOYBN; Uncharacterized protein
STRINGGLYMA01G18040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-133GRAS family protein