PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G095100.1.p
Common NameGLYMA_01G095100, LOC100788208
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 369aa    MW: 39353.2 Da    PI: 7.0209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G095100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0893117126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC+ f++ GtC+y  +C+FaH+
  Glyma.01G095100.1.p  93 FKTKLCCKFRA-GTCPYITNCNFAHS 117
                          69*********.*************8 PP
2zf-CCCH18.63.4e-06169194126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk + C+ f+    C+yGd+C+F H+
  Glyma.01G095100.1.p 169 YKGRHCKKFYTEEGCPYGDSCTFLHD 194
                          78888********************7 PP
3zf-CCCH42.88.4e-14247272126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Glyma.01G095100.1.p 247 WKTRICNKWEMTGYCPFGNKCHFAHG 272
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-890123IPR000571Zinc finger, CCCH-type
SMARTSM003560.003592118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8492119IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-9166196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7167196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.086168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-16243276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10244277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309246274IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9246273IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10247272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDFARDGNVV QIITGGGGGG GGGESWSGDQ ADWATEDEYR FWNNNNSGGD SETTPSNSNY  60
EGRSSEPPSK KSRNSSQEGS SSNRSKAIGK MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE  120
LRRPPPNWQE IVAAHEEEKA VMIEPPREEF QIPTVGSTTF SGEMMQRSYK GRHCKKFYTE  180
EGCPYGDSCT FLHDEQSKNR ESVAISLGPG GYGGGGGGGG GVGGGASGGN GGANAAGNGP  240
NSKPSNWKTR ICNKWEMTGY CPFGNKCHFA HGATELHRYG GGLMEGENRD AASAVAGDTN  300
KGVPSKASAD NVVAAVTLVA HSDVYHIGVP SQRPSSMVIQ RPGQRAHQKW KGPDKISRIY  360
GDWIDDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.282290.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G095100.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516789.10.0zinc finger CCCH domain-containing protein 12
RefseqXP_006573203.10.0zinc finger CCCH domain-containing protein 12
RefseqXP_028234585.10.0zinc finger CCCH domain-containing protein 12-like
RefseqXP_028234594.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ84UQ31e-125C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A445M1170.0A0A445M117_GLYSO; Zinc finger CCCH domain-containing protein 56 isoform A
TrEMBLI1J6A50.0I1J6A5_SOYBN; Uncharacterized protein
STRINGGLYMA01G10610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-120C3H family protein