PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G112700.1.p
Common NameGLYMA_01G112700, LOC100813517
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 338aa    MW: 38163.2 Da    PI: 9.9062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G112700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-0757102346
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                          rWT++E +l+ +a + + ++   +W ++a+ ++ g+t  +++  ++ 
  Glyma.01G112700.1.p  57 RWTPQENKLFENALAVFDKDtpdRWLKVAALIP-GKTVGDVIKQYRE 102
                          9********************************.******9999986 PP
2Myb_DNA-binding43.38.7e-14165209347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Glyma.01G112700.1.p 165 PWTKEEHRQFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 209
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.94953108IPR017884SANT domain
SMARTSM007175.8E-854106IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-1056111IPR009057Homeodomain-like
CDDcd001672.40E-657103No hitNo description
PfamPF002497.1E-657102IPR001005SANT/Myb domain
PROSITE profilePS5129420.647158214IPR017930Myb domain
SuperFamilySSF466898.61E-17159213IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-17161213IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-12162209IPR009057Homeodomain-like
SMARTSM007174.4E-13162212IPR001005SANT/Myb domain
CDDcd001674.93E-11165210No hitNo description
PfamPF002494.2E-12165209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLLDYILLSS STSPPLFTSS LTLNSKRETM NRGIEVLSPA SYLQSSNWLF QESSGTRWTP  60
QENKLFENAL AVFDKDTPDR WLKVAALIPG KTVGDVIKQY RELEADVSVI ESGFIPVPGY  120
TATDSFTLEW VNNQGFGGLR QFYGVTGKRG ASNRPSEQER KKGVPWTKEE HRQFLMGLKK  180
YGKGDWRNIS RNFVITRTPT QVASHAQKYF IRQLSGGKDK KRSSIHDITM VNLPEAKSLS  240
SESNRPSSLD HSVKDVNPPR QNQKLSTTMV IKQEHDWKLP CETVPMHFNS TNRNMFMTQL  300
CGISSNGSKP LQEQYFLSGC QFGPYGTIMQ MQSMQNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1654123776RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.188530.0flower| hypocotyl| leaf| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G112700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940460.0BT094046.1 Soybean clone JCVI-FLGm-24J1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516340.10.0transcription factor DIVARICATA isoform X1
SwissprotQ8S9H71e-110DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0R0LGJ70.0A0A0R0LGJ7_SOYBN; Uncharacterized protein
STRINGGLYMA01G27720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-118MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]