PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G113300.1.p
Common NameGLYMA_01G113300, LOC102668301
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 153aa    MW: 17537 Da    PI: 10.5377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G113300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-067193123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Glyma.01G113300.1.p 71 FICEICNKGFQRDQNLQLHRRGH 93
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-56994No hitNo description
Gene3DG3DSA:3.30.160.603.1E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.2E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8457193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSNLTSTFAE ARASSDNRTE IGTDYSQQYF TPPQTQTQPP LKKKRNLSAN PDPKAEVVSL  60
SPKTLLASNR FICEICNKGF QRDQNLQLHR RGHNLPWKLN QRSSKEIIRK KVYVCPEASC  120
MHHEPSRALG DLTGIKKHFC RKHGQKKWKY DK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.136260.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G113300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574156.11e-112protein indeterminate-domain 11
SwissprotQ9LRW77e-71IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0R0L9801e-111A0A0R0L980_SOYBN; Uncharacterized protein
STRINGGLYMA01G27910.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.14e-71indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]