PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G123000.1.p

Common Name

GLYMA_01G123000, LOC102667489

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 179aa MW: 20431.8 Da PI: 8.0721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G123000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.4e-10	48	89	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri ++f L++++P K++ +++Le+A++Y+k L Glyma.01G123000.1.p 48 AARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIQYVKFL 89 5699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.275	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-14	45	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-12	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-13	46	93	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-12	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-7	49	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MDHHTPSTNP TLSQFSSSKS NKSLNKEKKG GARKCKGVRL STDQQSVAAR ERRHRISDRF 60 KILQSMVPGG SKMDTVSMLE EAIQYVKFLK TQIWLHQTMI NFMDNDNNNN NNYESSSSLP 120 SPLLHPNRDN CYYFPSEQFF SPQPNAVFDY DNMQDLAQCS FQGEDTTYID ASLKYWPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G123000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	1e-68	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574196.1	1e-133	transcription factor bHLH140
Refseq	XP_028193495.1	1e-133	transcription factor bHLH140-like
Swissprot	Q9M041	9e-32	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A445M296	1e-132	A0A445M296_GLYSO; Transcription factor bHLH140
TrEMBL	K7K3F3	1e-132	K7K3F3_SOYBN; Uncharacterized protein
STRING	GLYMA01G30660.2	1e-133	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46
Representative plant	OGRP8941	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	2e-31	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Glyma.01G123000.1.p
Entrez Gene	102667489

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]