PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G129700.1.p
Common NameGLYMA_01G129700, LOC100500546
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 151aa    MW: 16494.5 Da    PI: 4.2128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G129700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.0007615441954
                         HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++++Lr++       +s  ++Ka+i   A++YI +L
  Glyma.01G129700.1.p 15 KLQQLRSVT------NSSAVNKASIIVDATRYIEEL 44
                         444444443......55579*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-5962IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-51063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.66581150IPR002912ACT domain
CDDcd048731.23E-490146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDSRRRGKNA SMQRKLQQLR SVTNSSAVNK ASIIVDATRY IEELKQKVDG LNSELGTAES  60
SISQDELPMV TVETLERGFL INVFSERNCP GMLGAILDAF EELGLDVLDA RVSCEDTFQL  120
EAVGGESQEN ESIDAQVVKQ AVLQAIQNMD *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.130680.0hypocotyl| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G129700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914830.0BT091483.1 Soybean clone JCVI-FLGm-8G23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235904.11e-105uncharacterized protein LOC100500546
RefseqXP_028237522.11e-105uncharacterized protein LOC114416735
TrEMBLA0A0B2SJ221e-104A0A0B2SJ22_GLYSO; Transcription factor SCREAM2
TrEMBLA0A445M2J11e-103A0A445M2J1_GLYSO; Uncharacterized protein (Fragment)
TrEMBLC6T2271e-104C6T227_SOYBN; Uncharacterized protein
STRINGGLYMA01G32130.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Representative plantOGRP190735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-11bHLH family protein