PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G131000.1.p

Common Name

GLYMA_01G131000, LOC100782694

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 109aa MW: 12356.3 Da PI: 7.3014

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G131000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.2	1.5e-34	10	93	1	85
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lr+ C dC+++pyfp ++p+kfan+hk+FGa nv+kl +++++ +reda++sl+yeAea+++dPvyG+vg i+ l + Glyma.01G131000.1.p 10 PCDACKFLRK-CMMDCIFSPYFPPKEPQKFANMHKIFGACNVSKLQNEVQPYQREDAVNSLAYEAEAWIEDPVYGCVGAISVLLK 93 7*****98.******************************************************************987643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.797	9	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-33	10	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MASSSYSNSP CDACKFLRKC MMDCIFSPYF PPKEPQKFAN MHKIFGACNV SKLQNEVQPY 60 QREDAVNSLA YEAEAWIEDP VYGCVGAISV LLKVQILHQH RERTFVQM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	3	91	4	93	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	3	91	4	93	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.53058	1e-115	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G131000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090839	1e-110	BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003516425.1	2e-77	LOB domain-containing protein 25
Refseq	XP_028199107.1	2e-77	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	1e-47	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A0B2SJ10	3e-76	A0A0B2SJ10_GLYSO; LOB domain-containing protein 25
TrEMBL	A0A445M2D5	8e-76	A0A445M2D5_GLYSO; LOB domain-containing protein 25
TrEMBL	I1J7M5	3e-76	I1J7M5_SOYBN; Uncharacterized protein
STRING	GLYMA01G32340.1	6e-77	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF35013	2	2
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-50	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Glyma.01G131000.1.p
Entrez Gene	100782694

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]