PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G133000.2.p
Common NameGLYMA_01G133000, LOC100789085
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 873aa    MW: 97224.5 Da    PI: 6.9709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G133000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.3e-18322421198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Glyma.01G133000.2.p 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 410
                          89**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Glyma.01G133000.2.p 411 -PEGKLIMGFRK 421
                          .77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-29314425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-18319422IPR015300DNA-binding pseudobarrel domain
CDDcd100179.93E-22320421No hitNo description
PfamPF023621.5E-15322421IPR003340B3 DNA binding domain
SMARTSM010191.2E-19322422IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166322423IPR003340B3 DNA binding domain
PROSITE profilePS5105013.161551601IPR011124Zinc finger, CW-type
PfamPF074961.1E-8556598IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC  60
TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CGRNSGPQPI ASNEKPNGSG TSKVQNVSTQ  120
QQCTSLANQL TVRGMQVGHY AENDELQCWF KTHNVETDGP FAEMKPEILP SVGELGNTLI  180
SQFHCESNGS SKASKAENCK PETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE  240
QSKTSPLLLG SRSHHLLPKP ARSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP  300
RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR  420
KATNSTAVQL QKGCSETHLN ALSKKWNSAG GDMSWHNIDM PESRKRDELP LPPVMVPEKK  480
RTRNIGSKSK RLLIDSQDAL ELKLTWEEAQ DMLRPPPTVK PSIVMIEDHV FEEYEEPPVF  540
GKRSIFVVRS TGVNEQWTQC DSCSKWRKLP VDVLTPPKWT CVENLWDQSR CSCAAPNELN  600
PRELDNLLRL NKEFKKQRLA ASQRLALEHE SSGLDALANA AILGDDASDS GRTSVVSTTK  660
HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR  720
NQLSWRTKDE SEVDSTLRHL TPVDRLENEV RVQNELDSRS QNHAVAEAAK GQLDLNCQPD  780
REDVQAWPNN LSMTSLLEEA NLPLETYLKR NGLSSLISEQ QTNSASNVQA QTTNDSEGKH  840
NEDCGTALVI HERESSPEEN SGQDREQNNS LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1695706KRRFKTLMMRKK
2695708KRRFKTLMMRKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.403580.0hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G133000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573404.10.0B3 domain-containing transcription repressor VAL2 isoform X2
RefseqXP_028237761.10.0B3 domain-containing transcription repressor VAL2-like
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A445M2U60.0A0A445M2U6_GLYSO; B3 domain-containing transcription repressor VAL2 isoform A
TrEMBLK7K3M10.0K7K3M1_SOYBN; Uncharacterized protein
STRINGGLYMA01G32810.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]