PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G133500.1.p
Common NameGLYMA_01G133500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 184aa    MW: 20876.7 Da    PI: 10.5086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G133500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-172167455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          hn+ ErrRRd+iN+++ eL++l+P++      K +Ka++L ++++Y+k+Lq
  Glyma.01G133500.1.p 21 VHNQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 67
                         6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.9551766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-192084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-142167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-192274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-152271No hitNo description
SMARTSM003531.8E-182372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAAKVERSSG SNKRIKANSV VHNQSERRRR DKINQRMKEL QKLVPNSSKT DKASMLDEVI  60
QYMKQLQAQV QMMNWMKMYT TMMLPITMQQ QQQQLKMSMM MAQMGMGMGM GMGMNKDMVM  120
NMNSMNIPGI PPMLPFPPFM PMVSCGDQLQ GTPEKSVTMD AYSKMASLYD QQLFHPPASS  180
SKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERRRRD
22631RRRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.284910.0cotyledon| flower| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G133500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311000.0KT031100.1 Glycine max clone HN_CCL_212 bHLH transcription factor (Glyma03g04000.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517013.31e-129transcription factor UNE10
RefseqXP_028237828.11e-129transcription factor UNE10-like
SwissprotQ8GZ381e-27UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0B2PR581e-128A0A0B2PR58_GLYSO; Transcription factor UNE10
TrEMBLK7K3M71e-129K7K3M7_SOYBN; Uncharacterized protein
STRINGGLYMA01G32890.21e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-27bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]