PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G136300.1.p
Common NameGLYMA_01G136300, LOC100801785
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 738aa    MW: 81389.8 Da    PI: 6.1077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.43.6e-983817363374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+
  Glyma.01G136300.1.p 381 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQ 464
                          689*************************************************9...44444445555...59****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          f+++t+Nqa+ eave+ +r+H+iDfdi+ G+QW +++q+La R++g+psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fe nv+ 
  Glyma.01G136300.1.p 465 FANFTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQELALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFELNVFS 554
                          *****************************************************************************************9 PP

                 GRAS 183 akrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                           ++l++ +   L ++  +Ea+aVn+ ++ ++ +      +s  ++vL++vk+l+Pkvvv  ++ +d+ + ++ + +++ l++ysal++sl
  Glyma.01G136300.1.p 555 IESLNSASCPLLgQFFDNEAIAVNMPVSSFTNY------PSLFPSVLHFVKQLRPKVVVTLDRICDRIDVPLPTNVVHVLQCYSALLESL 638
                          999****9999966778**********888877......555568********************************************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          +a    + ++ +k+Er++++++i++++   + +    +e+l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+
  Glyma.01G136300.1.p 639 DAV-NVNLDALQKIERHFIQPAIKKIILGHHHS----QEKLPPWRNLFIQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLC 723
                          665.3566999*****************99998....9**************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          W++++L+svS Wr
  Glyma.01G136300.1.p 724 WQRKELISVSTWR 736
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.39353716IPR005202Transcription factor GRAS
PfamPF035141.3E-95381736IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MKAMPLPFEE FQGKGVLDFS SASDLFSVLL HHPQPKWTTD KADYCYVGSS TEPTSVLDSR  60
RSPSPPTSSS TMSSSLGSSS NNSTSKGGGG SGTSANTTTN PTPPSGNNNN NPPQESSPEK  120
CGIRMEDWEG QDQSILRLIM GDVEDPSAGL SKLLQSTACG SQSVDFNAGF GVVDQQGLNM  180
NMNMVSSGNI DQNYPAGFPF IAENIDGQNA KAGSGTGQVS ESVVFSGNNP LMVSTSVSPG  240
VFTSQQQQEF GVVDEKPQVI NPQFMLNQNQ VQFSENPSFF VPLMYPQVQV QEQQVFSPPH  300
QSKRPLFDTI GHNFQAPRLP LLDSGQEVFG RRQQTQLPLF PHHMQQQQQQ QQSMGLPSAK  360
QQKVSSTGDD ASHQFQQAIF DQLYKTAELI EAGNPVHAQG ILARLNHQLS PIGKPFQRAA  420
FYMKEALMSL LHSNAHSFMA FSPISFIFKI GAYKSFSEIS PVLQFANFTC NQALIEAVER  480
FDRIHVIDFD IGFGVQWSSF MQELALRSSG APSLKVTAIV SPSTCDEVEL NFTRENLIQY  540
AKDINVSFEL NVFSIESLNS ASCPLLGQFF DNEAIAVNMP VSSFTNYPSL FPSVLHFVKQ  600
LRPKVVVTLD RICDRIDVPL PTNVVHVLQC YSALLESLDA VNVNLDALQK IERHFIQPAI  660
KKIILGHHHS QEKLPPWRNL FIQSGFSPFT FSNFTEAQAE CLVQRAPVRG FHVERKPSSL  720
VLCWQRKELI SVSTWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2838573525378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.335480.0cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G136300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516440.10.0scarecrow-like protein 6
TrEMBLI1J7R80.0I1J7R8_SOYBN; Uncharacterized protein
STRINGGLYMA01G33270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-130GRAS family protein