PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G143800.1.p
Common NameGLYMA_01G143800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 199aa    MW: 21559.7 Da    PI: 8.3054
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.18.3e-40161161100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg++++lqqq+++
  Glyma.01G143800.1.p  16 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMN 105
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael +++++
  Glyma.01G143800.1.p 106 LQAELTYVQAR 116
                          ******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4815117IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-3916114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDCGGNKIGG SDRGGPCGAC KFLRRKCVKG CIFAPYFDSD QGTAHFAAVH KVFGASNASK  60
LLMRIPAHKR LDAVVTLCYE ALARARDPVY GCVGHLFALQ QQVMNLQAEL TYVQARLATM  120
QRLPMQVAPL PHPQSSSPPP TFHSSDHLAS NADLQSAPMM HFDPLQPHSA SLELSSVVFN  180
QSDQQLEVGN SKFWHGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-37141179111LOB family transfactor Ramosa2.1
5ly0_B5e-37141179111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.216971e-166cotyledon| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354101e-138AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238646.11e-137LOB domain-containing protein 19-like
SwissprotO221324e-63LBD19_ARATH; LOB domain-containing protein 19
SwissprotO813224e-63LBD31_ARATH; LOB domain-containing protein 31
TrEMBLK7K3V11e-145K7K3V1_SOYBN; Uncharacterized protein
STRINGGLYMA01G34523.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-65LOB domain-containing protein 31