PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G147600.1.p
Common NameGLYMA_01G147600, LOC100804801
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 215aa    MW: 22896.4 Da    PI: 9.016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G147600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1861111155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Glyma.01G147600.1.p  61 SVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALTIKG 111
                          78*****998.**********854...59*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1261111IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2261120IPR016177DNA-binding domain
CDDcd000181.60E-3061121No hitNo description
PROSITE profilePS5103223.05162119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3262120IPR001471AP2/ERF domain
SMARTSM003801.1E-3662125IPR001471AP2/ERF domain
PRINTSPR003671.7E-106374IPR001471AP2/ERF domain
PRINTSPR003671.7E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVEPAVAASS ELSDSTRNTN TNTPSPSSSS SLSPSPSPSS SSSKKRARDN NNSRNNSNKH  60
SVYRGVRMRT WGKWVSEIRE PRKKNRIWLG TFATAEMAAR AHDVAALTIK GSSAILNFPE  120
LAASLPRPAS NSPRDVQAAA AKAASMEAPP RTPPSPAATP EDDLGEIVEL PPLGTSFDSP  180
DRSSEFVFLD MDDGWPYSHP WATALMMVGT SLAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2050119272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G147600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517069.11e-151dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK7K3X31e-150K7K3X3_SOYBN; Uncharacterized protein
STRINGGLYMA01G35010.21e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]