PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G168500.1.p
Common NameGLYMA_01G168500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 211aa    MW: 23223.7 Da    PI: 7.1228
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G168500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06430531
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedCll 31
                          C+ +e+  ++ fC  ++  lC+ C +
  Glyma.01G168500.1.p  4 LCDACESAAAIVFCAADEAALCRACDE 30
                         7************************87 PP
2zf-B_box30.67.1e-1078117237
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                          + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Glyma.01G168500.1.p  78 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 117
                          5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.89138IPR000315B-box-type zinc finger
PROSITE profilePS501198.873130IPR000315B-box-type zinc finger
CDDcd000212.04E-4332No hitNo description
SuperFamilySSF578459.34E-674112No hitNo description
PROSITE profilePS501199.15877122IPR000315B-box-type zinc finger
SMARTSM003362.1E-1177122IPR000315B-box-type zinc finger
PfamPF006431.1E-778111IPR000315B-box-type zinc finger
CDDcd000214.35E-780110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVDPCSFIDV LRSDLIFFAV LCKLEIRVHM  60
CNKLASRHVR VGLASPSDVP RCDICENAPA FFYCETDGSS LCLQCDMIVH VGGKRTHGRY  120
LLFRQRVEFP GDKSSHAENP ASQPLEPGEA KRGQNPLPKL KMGEKQQNHK MPMVPTPGPD  180
ADGHAKMESK MIDLNMKPNR IHEQASNNQP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.35460.0cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G168500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954480.0BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987720.0BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517191.11e-130B-box zinc finger protein 18
RefseqXP_028241683.11e-130B-box zinc finger protein 18-like
SwissprotC0SVM52e-67BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0R0LC001e-154A0A0R0LC00_SOYBN; Uncharacterized protein
STRINGGLYMA01G37370.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.35e-72DBB family protein