PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G168500.3.p
Common NameGLYMA_01G168500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 190aa    MW: 20854.9 Da    PI: 7.6633
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G168500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.1e-07433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                          C+ +e+  ++ fC  ++  lC+ C ++ H
  Glyma.01G168500.3.p  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                         7**************************998 PP
2zf-B_box30.86e-105291237
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Glyma.01G168500.3.p 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                         5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000211.42E-6345No hitNo description
PfamPF006437.7E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578459.61E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.5E-85290IPR000315B-box-type zinc finger
CDDcd000211.81E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKSSH AENPASQPLE  120
PGEAKRGQNP LPKLKMGEKQ QNHKMPMVPT PGPDADGHAK MESKMIDLNM KPNRIHEQAS  180
NNQVFNKFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.35460.0cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G168500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954480.0BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987720.0BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517191.11e-135B-box zinc finger protein 18
RefseqXP_028241683.11e-135B-box zinc finger protein 18-like
SwissprotC0SVM51e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0R0LJ341e-139A0A0R0LJ34_SOYBN; Uncharacterized protein
STRINGGLYMA01G37370.11e-134(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-76DBB family protein