PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G169400.2.p
Common NameGLYMA_01G169400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 309aa    MW: 34248.2 Da    PI: 5.5995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G169400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.7e-19224258135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Glyma.01G169400.2.p 224 CSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 258
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.8E-801305IPR016679Transcription factor, GATA, plant
SMARTSM004011.8E-16218272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648218254IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14220280No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14222256IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.87E-14223271No hitNo description
PfamPF003206.6E-17224258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MECVEAALKS NYRKEMTLKL SPQTFTEEVS VQNGTTCDDF FVNDLLDFSH VEEEPEQQED  60
TPCVSLQHEN PSHEPCTFKD DYASVPTSEL SVLADDLADL EWLSHFVEDS FSEFSAAFPT  120
VTENPTACLK EAEPEPEIPV FSFKTPVQTK ARSKRTRNGL RVWPFGSPSF TDSSSSSTTS  180
SSSSSSPSSP LLIYTQSLDH LCSEPNTKKM KKKPSSDTLA PRRCSHCGVQ KTPQWRTGPL  240
GPKTLCNACG VRFKSGRLLP EYRPACSPTF SSELHSNHHR KVLEMRQKKE TVSVDETGFA  300
PAHVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.374940.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G169400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945310.0BT094531.1 Soybean clone JCVI-FLGm-14B8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242253.20.0GATA transcription factor 5-like
SwissprotQ9FH576e-78GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0R0LC160.0A0A0R0LC16_SOYBN; GATA transcription factor
STRINGGLYMA01G37450.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-79GATA transcription factor 5