PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G176100.1.p
Common NameGLYMA_01G176100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 108aa    MW: 12114.7 Da    PI: 5.176
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G176100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-082670244
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +rWTte  +l+ +a + + ++   +W+ Ia  +g g t+ ++k  +
  Glyma.01G176100.1.p 26 LRWTTEKNKLFENALAIYDKDtpeRWNNIAMFVG-GTTEVEVKRQY 70
                         79********************************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-42476IPR001005SANT/Myb domain
SuperFamilySSF466897.1E-112782IPR009057Homeodomain-like
CDDcd001672.55E-62774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MSTEFSLCSN LKAMTSYTLS SPNTSLRWTT EKNKLFENAL AIYDKDTPER WNNIAMFVGG  60
TTEVEVKRQY EILLEDIKNI ESGKVPLPDY TRNAGCGKLN ISSAEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-26281071186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G176100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073012e-88AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573585.15e-75transcription factor RADIALIS
RefseqXP_028242318.15e-75transcription factor RADIALIS-like
SwissprotF4JVB81e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445M4N81e-73A0A445M4N8_GLYSO; Protein RADIALIS-like 1
TrEMBLK7K4F21e-73K7K4F2_SOYBN; Uncharacterized protein
STRINGGLYMA01G38250.22e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]