PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G188600.1.p
Common NameGLYMA_01G188600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 169aa    MW: 18554 Da    PI: 9.7364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G188600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-172776255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Glyma.01G188600.1.p 27 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 76
                         7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-302785IPR001471AP2/ERF domain
SMARTSM003801.6E-382790IPR001471AP2/ERF domain
PROSITE profilePS5103222.3132784IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-212785IPR016177DNA-binding domain
PfamPF008475.0E-112776IPR001471AP2/ERF domain
CDDcd000182.27E-262786No hitNo description
PRINTSPR003672.5E-112839IPR001471AP2/ERF domain
PRINTSPR003672.5E-116686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MESEGRREGG ERETTAATRK VEGAERRYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP  60
VAAARAYDTA VFYLRGPSAR LNFPELLVRE GPAALVAGCD MSAASIRKKA TEVGARVDAL  120
QATLHHHYVP PRQLLSGGGG GSGDFPVRVV DLNKMPEPES SDCEWDVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142684463ATERF1
3gcc_A2e-142684463ATERF1
5wx9_A2e-142385973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.32020.0hypocotyl| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G188600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1708600.0AC170860.16 Glycine max cultivar Williams 82 clone gmw1-57d24, complete sequence.
GenBankEF0514480.0EF051448.1 Glycine soja isolate 3-5 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514490.0EF051449.1 Glycine soja isolate 3-6 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514510.0EF051451.1 Glycine soja isolate 3-7 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514530.0EF051453.1 Glycine soja isolate 4-12 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514540.0EF051454.1 Glycine soja isolate 4-22 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514550.0EF051455.1 Glycine soja isolate 4-19 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514570.0EF051457.1 Glycine soja isolate 3-3 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514580.0EF051458.1 Glycine soja isolate 3-14 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514590.0EF051459.1 Glycine soja isolate 3-1 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514600.0EF051460.1 Glycine soja isolate 3-11 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514610.0EF051461.1 Glycine soja isolate 3-2 dehydration responsive element-binding protein 1 gene, complete cds.
GenBankEF0514620.0EF051462.1 Glycine soja isolate 4-17 dehydration responsive element-binding protein 1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238164.21e-121DNA-binding domain-containing protein
RefseqXP_028243823.11e-121ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH943e-52ERF10_ARATH; Ethylene-responsive transcription factor ERF010
SwissprotQ9SNE12e-52ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA9NJI81e-119A9NJI8_GLYSO; Dehydration responsive element-binding protein 1
TrEMBLI1J9931e-119I1J993_SOYBN; Uncharacterized protein
STRINGGLYMA01G39540.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.14e-54DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]