PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G192600.1.p

Common Name

GLYMA_01G192600, LOC100816189

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 244aa MW: 26474.9 Da PI: 7.2656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G192600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.4	3.5e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++ Glyma.01G192600.1.p 2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 6*************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ Glyma.01G192600.1.p 92 HVCQAAVETVLR 103 ****998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.703	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTVRPM PELLGLDAPT 120 PTADDASEGE VTCTDKWRVR DPNPNFPGTR FPGSRSDKAG SGGKRKRFEE LAKLQTATTD 180 LNLRLTPSFL QNAASYGCRQ EIRWPGSPSM NSEESGTTTA CLESGIGDHY AHDGDRKVLN 240 LFI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.32784	0.0	meristem\| root\| seed coat\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G192600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340876.1	0.0	LBD domain-containing transcription factor
Refseq	XP_028244414.1	0.0	LOB domain-containing protein 37-like
Swissprot	Q9SN23	8e-81	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A445M5C5	1e-180	A0A445M5C5_GLYSO; LOB domain-containing protein 38
TrEMBL	I1J9D3	1e-180	I1J9D3_SOYBN; Uncharacterized protein
STRING	GLYMA01G40010.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-83	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Glyma.01G192600.1.p
Entrez Gene	100816189