PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G198000.1.p
Common NameGLYMA_01G198000, LOC100816024
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 329aa    MW: 36663.4 Da    PI: 8.1191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G198000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12142188455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er RR++i + f  L  l+P +     kK++Ka++L  A++++k+Lq
  Glyma.01G198000.1.p 142 DHIIAERMRREKISQQFVALSALIPDL-----KKMDKASVLGDAIKHVKQLQ 188
                          5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-11143192No hitNo description
PfamPF000101.8E-9143188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16143202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTTREESWTS WLCDLEPEDY NNFVHQSDSN GVGGIFPSSK DSSSASQTEH SSTVSNSSED  60
DKVFGERPAK TLKIGTSNSS NTEFLSQKKD SSPSYIIFSD NVNQLQAPTL KPKGKVACHG  120
RKGSLENQNF GSVSRSPHHA KDHIIAERMR REKISQQFVA LSALIPDLKK MDKASVLGDA  180
IKHVKQLQEQ VKLLEEKNKR KRVVESVVYV KKSKLSAAED VFNTFSNSGD GNSYDISETK  240
TNESFPEVEA RVLEKHVLIR IHCGKQKGLF INILKDIENL HLSVINSSIL LFGTSKLDIT  300
IVAEMDEEFS LSVKELARKL RIGLMQFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G198000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102772e-32AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573685.10.0transcription factor bHLH18
TrEMBLK7K4T30.0K7K4T3_SOYBN; Uncharacterized protein
STRINGGLYMA01G40611.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-47bHLH family protein