PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G199200.3.p
Common NameGLYMA_01G199200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LSD
Protein Properties Length: 146aa    MW: 15186.8 Da    PI: 8.0696
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G199200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-133054125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lL YP GA+sV+Ca+C++V
  Glyma.01G199200.3.p 30 CSGCRNLLLYPVGATSVCCAVCNAV 54
                         ************************9 PP
2zf-LSD144.82e-146791125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         CggC+t L+Y rGA+sV+C++C+tV
  Glyma.01G199200.3.p 67 CGGCHTFLMYIRGATSVQCSCCHTV 91
                         ************************9 PP
3zf-LSD134.63.2e-11105129125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          Cg+C+ lL+Y +GA+sV+Ca+C +V
  Glyma.01G199200.3.p 105 CGNCKMLLRYQYGARSVKCAVCSFV 129
                          **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-122757IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-103054IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.100.00144126No hitNo description
TIGRFAMsTIGR010531.7E-146493IPR005735Zinc finger, LSD1-type
PfamPF069436.2E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-9102131IPR005735Zinc finger, LSD1-type
PfamPF069434.4E-10105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLVPLAPYPP PPPPAPYTPP PNGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTTVPPP  60
EMAQLVCGGC HTFLMYIRGA TSVQCSCCHT VNLALEANLV AHVNCGNCKM LLRYQYGARS  120
VKCAVCSFVT SVGASTSTTE QKFST*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G199200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1369451e-128BT136945.1 Lotus japonicus clone JCVI-FLLj-13N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.15e-83protein LOL1
RefseqXP_021593716.15e-83protein LOL1
RefseqXP_021593717.15e-83protein LOL1
RefseqXP_021593718.15e-83protein LOL1
SwissprotQ93ZB11e-74LOL1_ARATH; Protein LOL1
TrEMBLA0A0R0LKF01e-98A0A0R0LKF0_SOYBN; Uncharacterized protein
STRINGcassava4.1_018557m2e-82(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-63lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]