PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G206700.1.p

Common Name

GLYMA_01G206700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 276aa MW: 30694.5 Da PI: 6.1638

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G206700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.8	8.4e-21	136	186	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Glyma.01G206700.1.p 136 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 186 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.09E-32	135	194	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.2E-32	135	195	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.223	136	194	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-37	136	200	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-22	136	195	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-14	136	186	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-13	137	148	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-13	176	196	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MANSLEVSAL NRIKLHLLGE LSPLPLTTSS QSSSICSQSS CSDSSATLDQ IFSEFLYFPT 60 SSSENHFSAL EFEAKPEIIY LETPNPQLEF TSLTTQDSKK PQSSRKPSLQ ISLPKKTEWI 120 QFGDPESNPN AEEKKHYRGV RQRPWGKFAA EIRDPNKRGS RVWLGTFDTA IEAAKAYDRA 180 AFRLRGSKAI LNFPLEAGAD DRKRQREEQE EEPAVEVVKR VKVEESDVSR IKETPLTPSS 240 WLGFWGGDSN GIFTVPPLSP LSPHPALGFP QLMVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-31	135	195	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41651	0.0	flower\| hypocotyl\| leaf\| pod\| root\| seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G206700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095987	0.0	BT095987.1 Soybean clone JCVI-FLGm-15G18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025984674.1	1e-156	LOW QUALITY PROTEIN: ethylene-responsive transcription factor 5-like
Refseq	XP_028246056.1	1e-156	ethylene-responsive transcription factor 5-like
Swissprot	O80341	5e-66	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A0R0LEF9	0.0	A0A0R0LEF9_SOYBN; Uncharacterized protein
STRING	GLYMA11G03900.1	1e-139	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17490.1	4e-52	ethylene responsive element binding factor 6

Link Out ? help Back to Top
Phytozome	Glyma.01G206700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]