PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G226600.1.p
Common NameGLYMA_01G226600, LOC100775380
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 466aa    MW: 52340.3 Da    PI: 6.4502
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G226600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.71.9e-130444621374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+ A++v++gdl++a+ +L+++s++as dgd+mqR+a+yf eALa r++++++++ +al++s+ +   +s+e+ ++klf+e+ P+
  Glyma.01G226600.1.p  44 LIHLLLAGANFVATGDLQNANLTLEQISQHASLDGDTMQRIASYFSEALADRILKTWPGIHRALNSSRIT--MVSDEILVQKLFFELLPF 131
                          689*************************************************************999998..69**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkfs++++NqaI+ea+ege++vHi+D+    ++QW++Llq L++Rpegpp+lRiTgv++    +ke l +++++L++ Ae+l++pf+fn+
  Glyma.01G226600.1.p 132 LKFSYILTNQAIVEAMEGEKMVHIVDLYGAGPAQWISLLQVLSARPEGPPHLRITGVHH----KKEVLDQMAHKLTEEAEKLDIPFQFNP 217
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.....................................................des 217
                           v ++le+l++++Lrvk+gEala++++lqlh+ll                                                     ++s
  Glyma.01G226600.1.p 218 -VLSKLENLDFDKLRVKTGEALAISSILQLHSLLaldedasrrkspllsknsnaihlqkgllmnhntlgdlldgyspspdsassspaASS 306
                          .799******************************************************************************99997444 PP

                 GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                           +l +  +++L+++++lsPkv+vv+eq+ +hn  + +er++eal  y+a fd+le++++r+s +r k+E++l+g+ei+n++aceg er+e
  Glyma.01G226600.1.p 307 SALMN-SESFLNALWGLSPKVMVVTEQDFNHNCLTMMERLAEALFSYAAYFDCLESTVSRASMDRLKLEKMLFGEEIKNIIACEGCERKE 395
                          44443.69********************************************************************************** PP

                 GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          rhe++ +W +rl+ +GF +vp+s++ + q ++ l++++ +gy++ ee g ++++W++r+L+s++aWr
  Glyma.01G226600.1.p 396 RHEKMDRWIQRLDLSGFANVPISYYGMLQGRRFLQTYGCEGYKMREECGRVMICWQERSLFSITAWR 462
                          ******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.0818442IPR005202Transcription factor GRAS
PfamPF035146.6E-12844462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFQEEGLSSV TSSPLQFFSM MSLSVSPSLG SPYQMKCEQR GLVLIHLLLA GANFVATGDL  60
QNANLTLEQI SQHASLDGDT MQRIASYFSE ALADRILKTW PGIHRALNSS RITMVSDEIL  120
VQKLFFELLP FLKFSYILTN QAIVEAMEGE KMVHIVDLYG AGPAQWISLL QVLSARPEGP  180
PHLRITGVHH KKEVLDQMAH KLTEEAEKLD IPFQFNPVLS KLENLDFDKL RVKTGEALAI  240
SSILQLHSLL ALDEDASRRK SPLLSKNSNA IHLQKGLLMN HNTLGDLLDG YSPSPDSASS  300
SPAASSSALM NSESFLNALW GLSPKVMVVT EQDFNHNCLT MMERLAEALF SYAAYFDCLE  360
STVSRASMDR LKLEKMLFGE EIKNIIACEG CERKERHEKM DRWIQRLDLS GFANVPISYY  420
GMLQGRRFLQ TYGCEGYKMR EECGRVMICW QERSLFSITA WRPRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-385546214375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G226600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0950270.0BT095027.1 Soybean clone JCVI-FLGm-19K11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517515.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLI1JAF30.0I1JAF3_SOYBN; Uncharacterized protein
STRINGGLYMA01G43620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]