PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G228100.1.p
Common NameGLYMA_01G228100, LOC100781272
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 339aa    MW: 37556.8 Da    PI: 5.4918
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G228100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2791173271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Glyma.01G228100.1.p  91 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpingvstpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 173
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.3E-1304338IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.5E-4687179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-3490173IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2592173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-2193174IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.40E-43178281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.07E-42180295No hitNo description
SMARTSM011386.1E-69180336IPR014889Transcription factor DP, C-terminal
PfamPF087813.7E-42181295IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGTQPQQTFW EEEDEEMQGR GTTISGQSMS TSRSLGSPSS RSEQTMATPA SDSTFLRLNH  60
LDIHGDDAGS QGAVASKKKK RGQRAIGGDK SGRGLRQFSM KVCEKVESKG RTTYNEVADE  120
LVAEFADPIN GVSTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSLS  180
DMEELKSERL GLRNRIEKKA AYLQELEEQY IGLQKLIQRN EQLYSSGNAP NGGVSLPFIL  240
VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKLCEGSHND NTTDNPTDGG  300
EGSSIYAQVP TSVSNPPNRP PSSPPLPGIL KARVKNEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3884178193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.274950.0cotyledon| flower| leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G228100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937950.0BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517526.10.0transcription factor-like protein DPB
RefseqXP_028248476.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-159DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445M7020.0A0A445M702_GLYSO; Transcription factor-like protein DPB isoform A
TrEMBLI1JAG80.0I1JAG8_SOYBN; Uncharacterized protein
STRINGGLYMA01G43800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-152Transcription factor DP