PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G231000.1.p
Common NameGLYMA_01G231000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 204aa    MW: 22790.8 Da    PI: 5.0701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G231000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-191666155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GVr++k +g+Wv+eIr+p   gk+ r++lg++ ++e+Aa+a++ a++ l+g
  Glyma.01G231000.1.p 16 SSYRGVRQRK-WGKWVSEIREP---GKKSRIWLGSYESPEMAAAAYDVAALHLRG 66
                         67*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.18E-231676No hitNo description
SuperFamilySSF541711.9E-221675IPR016177DNA-binding domain
PfamPF008477.6E-131666IPR001471AP2/ERF domain
PROSITE profilePS5103223.2611774IPR001471AP2/ERF domain
SMARTSM003809.0E-381780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-321775IPR001471AP2/ERF domain
PRINTSPR003676.4E-131829IPR001471AP2/ERF domain
PRINTSPR003676.4E-135676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQECHVIAPT TTTATSSYRG VRQRKWGKWV SEIREPGKKS RIWLGSYESP EMAAAAYDVA  60
ALHLRGRAAR LNFPELVETL PRPTSSKPED VQVAAQQAAV MFRISPTMSP INNHQGCVND  120
NNIIKGSVVP VRVGLSPTQI QAINESPLDS PKMWMVQMAE ALRFGFDDHS MMMLPSDDDD  180
YALELSGWEE IQHESLWDSP EYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-171874360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.251050.0flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G231000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517540.21e-152ethylene-responsive transcription factor ERF022
RefseqXP_028179829.11e-152ethylene-responsive transcription factor ERF022-like
TrEMBLA0A445M7691e-150A0A445M769_GLYSO; Ethylene-responsive transcription factor ERF021
STRINGGLYMA01G44130.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.14e-36ERF family protein