PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G231200.1.p
Common NameGLYMA_01G231200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 185aa    MW: 20338.7 Da    PI: 6.805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G231200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-181665255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g+Wv+eIr+p   g ++r++lg+f t+e+Aa+a++ a++ ++g
  Glyma.01G231200.1.p 16 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 65
                         69****999.**********8...325***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-231575No hitNo description
SuperFamilySSF541719.15E-231574IPR016177DNA-binding domain
SMARTSM003809.1E-381679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-321674IPR001471AP2/ERF domain
PfamPF008477.1E-121665IPR001471AP2/ERF domain
PROSITE profilePS5103223.8811673IPR001471AP2/ERF domain
PRINTSPR003673.7E-101728IPR001471AP2/ERF domain
PRINTSPR003673.7E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPSSSSSHVV GAASSAYRGV RKRKWGKWVS EIREPGTKTR IWLGSFETPE MAAAAYDVAA  60
LHFRGRDARL NFPELASTLP RPVSNNADHI RMAAHQAALR LRTNPAAPDT AGSAGSSSSA  120
PLTVRLSPTQ IQAINDSPMD SPQTWMQMPD TFMMHDQSMM FASNGYSFED NEWEHMQNDS  180
LWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-161273163ATERF1
3gcc_A9e-161273163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G231200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573841.11e-134ethylene-responsive transcription factor ERF021
RefseqXP_028179986.11e-134ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I25e-64ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0R0LM851e-133A0A0R0LM85_SOYBN; Uncharacterized protein
STRINGGLYMA01G44140.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-61ERF family protein