PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G232000.1.p
Common NameGLYMA_01G232000, LOC100803550
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 179aa    MW: 19557.7 Da    PI: 5.7555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G232000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.2e-16958255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + kGVr++k +g+Wv+eIr+p +   + r +lg++ t e Aa a++ a  +l+ 
  Glyma.01G232000.1.p  9 KLKGVRRRK-WGKWVSEIRVPGT---QGRLWLGTYATQEAAAVAHDVAVYCLRR 58
                         78****998.**********843...48*********************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-15870No hitNo description
PROSITE profilePS5103221.061968IPR001471AP2/ERF domain
PfamPF008471.8E-9957IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-16968IPR016177DNA-binding domain
SMARTSM003806.9E-25974IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-241069IPR001471AP2/ERF domain
PRINTSPR003672.4E-71021IPR001471AP2/ERF domain
PRINTSPR003672.4E-73248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MRSSSSAKKL KGVRRRKWGK WVSEIRVPGT QGRLWLGTYA TQEAAAVAHD VAVYCLRRPS  60
SLDKLNFPET LSSFSLQLRD MSPRSVQKVA SDIGMDVDAR NILAGKTSTV VAETNYESDE  120
RSRTVCDVDG GGADEHSDVF RWDAVGNEDG GSWHGSGGDC KERDQALSIS IEDYLELS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G232000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516746.11e-128ethylene-responsive transcription factor ERF020
RefseqXP_028179999.11e-128ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I85e-37ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0B2RPD01e-127A0A0B2RPD0_GLYSO; Ethylene-responsive transcription factor ERF020
TrEMBLK7K5F01e-127K7K5F0_SOYBN; Uncharacterized protein
STRINGGLYMA01G44230.21e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-39ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]