PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G236300.2.p
Common NameGLYMA_01G236300, LOC100804447
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 577aa    MW: 62808.5 Da    PI: 7.3183
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G236300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.52e-16287324340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Glyma.01G236300.2.p 287 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 324
                          89**********************************96 PP
2TCR51.12.7e-16371409139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Glyma.01G236300.2.p 371 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 409
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-18285326IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11286411IPR005172CRC domain
PfamPF036387.4E-12288323IPR005172CRC domain
SMARTSM011144.4E-17371412IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.6E-12373409IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEPKSEGPDC YWDSLIPDAL DMLIFNSPGD AEAFKGLMHK PLASSIRLNE FMSMLPHSTI  60
NNGRKMHIVD SDASGSAPEI EDHCSELMTA TGTNQTQDNF ANVALVTSNS NEKANDQLVS  120
ATHRTIRRRC LDFEMANVQR KNSDENSNTG SSTSESDERN VANEKQLLPA KRNGDLQRGI  180
LQGIGLHLNA LAALKEYKGI QIEKLSSGRQ LSLPSSTSLQ ISTSQEHQNL SLVPVSSERE  240
LDPSDNGVQP AEDCSQPSAY MAGEDFNQNS PKKKRRKSET PGETEGCKRC NCKKSKCLKL  300
YCECFAAGVY CIEPCSCQDC FNKPIHEDTV LQTRKQIESR NPLAFAPKVI RNSDSVPEIG  360
DDPNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSIS CRCEGCKNAF GRKDGSASVG  420
IETDPEETEA TDKGVTEKAL QKTEIQNTED HPDSATVATP LRLSRPLLPL PFSSKGKPPR  480
SFVTTISGSA LFASQKLGKP NPLWSQAKHF QTVPDEEIPD ILQGDSSPIT CIKTSSPNGK  540
RISSPNCDLG SSPSRRGGRR LILQSIPSFP SLTPHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1729040814120Protein lin-54 homolog
5fd3_B2e-1729040814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271275KKKRR
2271276KKKRRK
3272276KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419380.0cotyledon| hypocotyl| seed coat| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G236300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517569.10.0protein tesmin/TSO1-like CXC 2
RefseqXP_028180593.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A445M7J00.0A0A445M7J0_GLYSO; Protein tesmin/TSO1-like CXC 2
TrEMBLI1JAR50.0I1JAR5_SOYBN; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-121TESMIN/TSO1-like CXC 2