PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G244800.2.p
Common NameGLYMA_01G244800, LOC100782165
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 343aa    MW: 38779.6 Da    PI: 5.4579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G244800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.41.9e-1632122199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++ps+v    +l lpkkf++ ++  ++ ++t+ lede+g+ +e k+  +k +    l++GW++F  a++L e D+++F+l++ s+f
  Glyma.01G244800.2.p  32 FLKSMLPSHVAGGFWLGLPKKFCNLYM--PKLDTTIALEDETGQLYETKYLAQKAG----LSAGWRGFSIAHNLLEMDVLIFHLVQPSKF 115
                          89*********************8886..44889****************444444....************************998999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Glyma.01G244800.2.p 116 --RVYIIRS 122
                          ..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2225122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1825123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-2330121No hitNo description
SMARTSM010191.8E-1832123IPR003340B3 DNA binding domain
PROSITE profilePS5086312.06932123IPR003340B3 DNA binding domain
PfamPF023628.7E-1432122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGIVIDAPPC NTQAYQRAKE VQANLSPQFP TFLKSMLPSH VAGGFWLGLP KKFCNLYMPK  60
LDTTIALEDE TGQLYETKYL AQKAGLSAGW RGFSIAHNLL EMDVLIFHLV QPSKFRVYII  120
RSQESDELDG ALVLLKSDGC RKQSDDQVEN TSEDFDSGIR FSESVVSFKQ VTGVENFRIV  180
VNGLVIDSEL SKYIRNKYYE LCCSQRSFLH DHLLEGLNTK LAAGIISETI NIADAIKASN  240
LTTSPDSLVI WDKTLKAFET MGMNVSFLLI RLDQLMKLAL KLKRYKEVTL ERDHAAEELK  300
ALEAKLLEVK QTINRLDQEN DIQHMHPERL ETMFQELADA PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G244800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573914.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A445M8410.0A0A445M841_GLYSO; B3 domain-containing protein isoform D
TrEMBLK7K5N30.0K7K5N3_SOYBN; Uncharacterized protein
STRINGGLYMA01G45623.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-38B3 family protein