PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G004300.1.p
Common NameGLYMA_02G004300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 180aa    MW: 20165.8 Da    PI: 6.6726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000252343323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+++F++   L +H  +H
  Glyma.02G004300.1.p 23 CKLCNQVFTNTQALLTHVESH 43
                         *****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3692148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MANNFYNNAQ FSKLYNNPDP KGCKLCNQVF TNTQALLTHV ESHMAQEKDV VRRLNSSPPQ  60
HVNSQIQLGS HQFPPPPTMD DIRIFQSQSQ LMGMPQPISR NPFFNSNQIG SSSSSSMPIR  120
KMQVLPHAFP YVGNINGDGF KAFISNLEKP IKKIDFIDLV NVDDDNNSDV EVMDLDLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358710.0AC235871.2 Glycine max clone GM_WBb0132A17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145903.17e-50hypothetical protein PHAVU_007G277300g
TrEMBLA0A0R0KV591e-128A0A0R0KV59_SOYBN; Uncharacterized protein
STRINGGLYMA10G00655.11e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1527958