PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G025500.2.p

Common Name

GLYMA_02G025500, LOC100782014

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 238aa MW: 25635.2 Da PI: 6.5197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G025500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.4e-07	143	169	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ +L++l+P + Glyma.02G025500.2.p 143 SHSLAERARREKISERMKTLQDLVPGC 169 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.92E-6	137	178	No hit	No description
SuperFamily	SSF47459	1.83E-8	137	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.508	139	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-9	142	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-5	143	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDPAAIMNGA ANTTSFHLSE IWQFPPPNSP DALGLRRPHF AHGSFADFAP GPTRDADPAS 60 IAHKKPRHAA GEEEESAKGA STTNAVDEGG GGDGKRIKAS ESGEGGRENS SGKPAEQSGK 120 PPSEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK TLQDLVPGCN KFLSMKLEAV 180 NSRMESGIEV FPPKDFDQQT FDTTDMPFAS QATREYSRGS SSEWLHMQVG GGFERAT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26893	0.0	hypocotyl\| seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G025500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146684	1e-41	BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006574570.1	1e-175	transcription factor BHLH094 isoform X2
Refseq	XP_028193973.1	1e-175	transcription factor BHLH094-like isoform X2
Swissprot	Q69WS3	8e-54	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	K7K628	1e-174	K7K628_SOYBN; Uncharacterized protein
STRING	GLYMA02G02942.1	1e-170	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-57	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Glyma.02G025500.2.p
Entrez Gene	100782014