PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G036900.1.p
Common NameGLYMA_02G036900, LOC100785764
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 309aa    MW: 34903.3 Da    PI: 5.285
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G036900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.9e-102512852155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Glyma.02G036900.1.p 251 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 285
                          679*****************************885 PP
2ELK322.8e-11205226122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++LlrK+++++g+Lk EFs
  Glyma.02G036900.1.p 205 ELKDRLLRKFGSHIGTLKLEFS 226
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-2365109IPR005540KNOX1
PfamPF037908.0E-2367108IPR005540KNOX1
SMARTSM012563.2E-27117168IPR005541KNOX2
PfamPF037915.0E-25121167IPR005541KNOX2
PfamPF037893.5E-8205226IPR005539ELK domain
SMARTSM011886.5E-6205226IPR005539ELK domain
PROSITE profilePS512139.83205225IPR005539ELK domain
PROSITE profilePS5007113.297225288IPR001356Homeobox domain
SuperFamilySSF466897.7E-20226297IPR009057Homeodomain-like
SMARTSM003891.5E-14227292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-28230289IPR009057Homeodomain-like
CDDcd000861.43E-14237289No hitNo description
PfamPF059203.7E-18245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGMYGVPAE YADKALMTPE NLIFPPDYHH DFLAAGRIPL FGSDEFFSSS AGIHRQQEDD  60
VAATTVMKAK IASHPHYPRL LQAYIECQKV GAPPEIARLL EEIRRENDPC KSDAVSSSTC  120
FGADPELDEF MEAYCDMLVK YKSDLARPFD EATTFLNKIE MQLSHLCTGA SVSNVSDDGG  180
VSSDEDLSTG DGDAQDGQLK GEDRELKDRL LRKFGSHIGT LKLEFSKKKK KGKLPKEARQ  240
ALLQWWNVHY KWPYPTEADK IELAKSTGLD QKQINNWFIN QRKRHWKPSE NMQFSMMENF  300
NGRILADE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278900.0hypocotyl| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G036900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2569680.0KC256968.1 Caragana korshinskii Knotted-1 homeobox protein (KN-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519803.10.0homeobox protein knotted-1-like 6
RefseqXP_028195352.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-140KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A445LJ820.0A0A445LJ82_GLYSO; Homeobox protein knotted-1-like 6
TrEMBLI1JC490.0I1JC49_SOYBN; Uncharacterized protein
STRINGGLYMA02G04190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-116KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]