PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G041500.2.p
Common NameGLYMA_02G041500, SVPL
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 19832.9 Da    PI: 9.6109
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G041500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n + rqvtfskRr g++KKAeELSv+Cda+va+iifsstgkl+eyss
  Glyma.02G041500.2.p  9 KKIDNATARQVTFSKRRRGLFKKAEELSVMCDADVALIIFSSTGKLFEYSS 59
                         68***********************************************96 PP
2K-box51.54.3e-18931702097
                K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          + ++L ke+ +  +++R+l GedL+ L+++eLqqLe+ Le++l ++ +kK e ++++i +lq+k   l een++L++ 
  Glyma.02G041500.2.p  93 NCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITDLQRKGMLLMEENERLKRH 170
                          567899999999999************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.829161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-39160IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27323IPR002100Transcription factor, MADS-box
CDDcd002654.57E-39377No hitNo description
SuperFamilySSF554551.19E-31381IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.19687171IPR002487Transcription factor, K-box
PfamPF014861.3E-1692170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVMCD ADVALIIFSS TGKLFEYSSS  60
SMKEILERHH LHSKNLARME QPSLELQLVE NSNCSRLSKE VAEKSHQLRQ LRGEDLQGLN  120
IEELQQLERS LETGLGRVIE KKGEKIMSEI TDLQRKGMLL MEENERLKRH V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-21169169MEF2C
5f28_B9e-21169169MEF2C
5f28_C9e-21169169MEF2C
5f28_D9e-21169169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.185300.0cotyledon| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G041500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2564770.0EU256477.1 Glycine max short vegetative phase-like protein (SVPL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240951.11e-118MADS-box protein SVP-like
RefseqXP_006574408.11e-118MADS-box protein SVP-like isoform X1
RefseqXP_006574409.11e-118MADS-box protein SVP-like isoform X1
RefseqXP_028195895.11e-118MADS-box protein SVP-like isoform X1
RefseqXP_028195904.11e-118MADS-box protein SVP-like isoform X1
RefseqXP_028195913.11e-118MADS-box protein SVP-like isoform X1
SwissprotQ9FUY63e-97JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A445LJC81e-117A0A445LJC8_GLYSO; MADS-box protein SVP isoform A
TrEMBLA0A445LJC91e-117A0A445LJC9_GLYSO; MADS-box protein SVP isoform C
TrEMBLE3NYP91e-117E3NYP9_SOYBN; Short vegetative phase-like protein
TrEMBLI1JCA21e-118I1JCA2_SOYBN; Uncharacterized protein
STRINGGLYMA02G04710.11e-118(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]