PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G055900.1.p
Common NameGLYMA_02G055900, Glyma02g06240.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 74aa    MW: 8658.68 Da    PI: 9.6306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G055900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07446344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +l+ +a +++  +   +W  +a+ +g  R+ +++k ++
  Glyma.02G055900.1.p  4 SWTPRQNKLFEQALALYDREtpdRWQNVANVVG--RSVEDVKRHY 46
                         7*****************88************8..*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129312.313154IPR017884SANT domain
SuperFamilySSF466899.96E-13357IPR009057Homeodomain-like
CDDcd001671.93E-5450No hitNo description
PfamPF002491.4E-5446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MASSWTPRQN KLFEQALALY DRETPDRWQN VANVVGRSVE DVKRHYEILK EDVKRIEHGQ  60
VPFPRYKTNT SNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-265721179RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.159391e-123leaf| pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G055900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311791e-119KT031179.1 Glycine max clone HN_CCL_102 MYB/HD-like transcription factor (Glyma02g06240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129643.11e-42protein RADIALIS-like 1
SwissprotF4JVB81e-26RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445LJX28e-48A0A445LJX2_GLYSO; Protein RADIALIS-like 1
TrEMBLI1JCP48e-48I1JCP4_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA02G06240.11e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-29RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]