PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G073900.4.p
Common NameGLYMA_02G073900, LOC100792644
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 242aa    MW: 26124.5 Da    PI: 9.838
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G073900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17147180134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Glyma.02G073900.4.p 147 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 180
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.543141177IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-17141191IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.8E-15145178IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-15145204No hitNo description
CDDcd002029.78E-13146193No hitNo description
PfamPF003202.6E-15147180IPR000679Zinc finger, GATA-type
PROSITE patternPS003440147172IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKKEEEPQCT TTTKEDIAHA QFQTASPVSV LESSSFCSGE KAASRGPEIY IPVPCGRVRS  60
KRPRPATFNP HPVMQLISPA SSTGENVQHN ATTTSKAASS DSENFAESVI KGPKQASGEH  120
KNKRKIKVTF SSGQEQQNAP SQAVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR  180
LFPEYRPAAS PTFCAAVHSN SHKKVIEMRN KTGTKSGFAT DSAASPELIP NTNNSLTLEY  240
M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.267440.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G073900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519961.21e-178GATA transcription factor 8 isoform X1
RefseqXP_006574762.11e-179GATA transcription factor 8 isoform X2
RefseqXP_006574763.11e-179GATA transcription factor 8 isoform X2
RefseqXP_028199233.11e-178GATA transcription factor 8-like isoform X1
RefseqXP_028199239.11e-179GATA transcription factor 8-like isoform X2
RefseqXP_028199247.11e-179GATA transcription factor 8-like isoform X2
TrEMBLA0A0R0KTZ81e-176A0A0R0KTZ8_SOYBN; GATA transcription factor
TrEMBLA0A445LKN11e-176A0A445LKN1_GLYSO; GATA transcription factor
TrEMBLA0A445LKP31e-178A0A445LKP3_GLYSO; GATA transcription factor
TrEMBLK7K6X91e-178K7K6X9_SOYBN; GATA transcription factor
TrEMBLK7K6Y11e-178K7K6Y1_SOYBN; Uncharacterized protein
STRINGGLYMA02G08145.21e-178(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-43GATA family protein