PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G087200.1.p

Common Name

GLYMA_02G087200, LOC100820321

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 227aa MW: 25696.9 Da PI: 4.7251

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G087200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	108.4	4.5e-34	1	89	8	96
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++i ++lP+nakis da +++q+ ++++i fvt +a ++cq e rk +n++dllwa+ +lGf+dyvepl++++++yr++eg Glyma.02G087200.1.p 1 MPITNVTKITGQILPNNAKISYDAMDMIQQGATKYINFVTRKAKEQCQSEYRKIMNAEDLLWAMKKLGFNDYVEPLTAFVQRYRNIEGS 89 8*************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.77E-23	1	106	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-30	1	91	IPR009072	Histone-fold
Pfam	PF00808	3.1E-14	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.8E-11	28	46	No hit	No description
PRINTS	PR00615	5.8E-11	47	65	No hit	No description
PRINTS	PR00615	5.8E-11	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MPITNVTKIT GQILPNNAKI SYDAMDMIQQ GATKYINFVT RKAKEQCQSE YRKIMNAEDL 60 LWAMKKLGFN DYVEPLTAFV QRYRNIEGSD LFTSHKEPIP HIENNEPRPN PMPTLEILHS 120 PVPPPVHSSK PYFSIDTSHR ELIPHTENNG PSLGLEPNHM PTFEMTPLSP SVHPFESYFS 180 IDPDTNLEIL DPNDINEIYL DEFGVGCSND AFNNVDVSAL FKHDQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-29	1	84	13	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G087200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628426.1	1e-168	nuclear transcription factor Y subunit beta
TrEMBL	A0A0R0KTG7	1e-167	A0A0R0KTG7_SOYBN; Uncharacterized protein
STRING	GLYMA07G29695.1	1e-66	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	8e-32	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Glyma.02G087200.1.p
Entrez Gene	100820321