PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G089600.1.p

Common Name

GLYMA_02G089600

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 146aa MW: 16341.8 Da PI: 4.1956

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G089600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	72.1	8.6e-23	5	67	37	99
NF-YC 37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +mis+e+P+l+skace+fi elt+r+w+hae+n+++ ++ +d+a+++ +td+ +fl++i+p++ Glyma.02G089600.1.p 5 QMISSEIPMLMSKACEIFIQELTFRAWMHAEKNNKSIVQPCDVAKVIMQTDTMNFLTEIIPNN 67 79**********************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.76E-17	5	66	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.3E-18	5	65	IPR009072	Histone-fold
Pfam	PF00808	1.9E-7	5	50	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MFTKQMISSE IPMLMSKACE IFIQELTFRA WMHAEKNNKS IVQPCDVAKV IMQTDTMNFL 60 TEIIPNNLGD FSVFDAKEEN IANIAEENEV SLSFTAGFMG NPMMKMDSEE NAGNIVEGNQ 120 ATLPYTSGFM GNPMNMMNMD NVRMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	2e-16	5	66	58	119	HapE
4g92_C	2e-16	5	66	58	119	HapE
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G089600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028183225.1	1e-47	nuclear transcription factor Y subunit C-2-like
TrEMBL	A0A0R0KUF3	1e-101	A0A0R0KUF3_SOYBN; Uncharacterized protein
STRING	GLYMA02G09867.1	1e-73	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18213	6	6
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-19	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Glyma.02G089600.1.p