PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G099100.1.p
Common NameGLYMA_02G099100, LOC100808573
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 335aa    MW: 37094.2 Da    PI: 7.3718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G099100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-05150169120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  Glyma.02G099100.1.p 150 FSCTVCNKMFNRFNNMQMHM 169
                          89*****************9 PP
2zf-C2H213.70.00019235257123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk+F  + + ++H +++
  Glyma.02G099100.1.p 235 FGCRKCGKPFAVRGDWRTHEKNC 257
                          56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-5146171No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5150169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.889150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-5218255No hitNo description
Gene3DG3DSA:3.30.160.607.9E-5221255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQAHHPFSYI SSCPGNSTSS AFLEPHHHHH EAVVDEASIS LSLGPPGQQH QQPNNPNKAV  60
TSSIPHHHYQ QNPTTTTSSD DHHRQRGGVT VALHIGLPST TPTTSPNSVT TTTTTTSKSP  120
DLHLASAAPN IQGQYWIPSP AQILIGPTQF SCTVCNKMFN RFNNMQMHMW GHGSQYRKGP  180
ESLRGAKPAS SMLRLPCYCC AEGCKNNIEH PRSRPLKDFR TLQTHYKRKH GAKPFGCRKC  240
GKPFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVR AFGDGHAPHT VESCGRVGED  300
GLLLLGDDDD DELEVEEDDE EEDYNSNDLA FGFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G099100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150438e-47AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574881.10.0zinc finger protein WIP6
SwissprotQ9FX681e-118ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLK7K7F40.0K7K7F4_SOYBN; Uncharacterized protein
STRINGGLYMA02G10970.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-110C2H2-like zinc finger protein