PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G099500.1.p
Common NameGLYMA_02G099500, LOC100801107
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family RAV
Protein Properties Length: 402aa    MW: 43610.2 Da    PI: 9.4593
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G099500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.4e-1481129155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Glyma.02G099500.1.p  81 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 129
                          89****9888.8*********3.....5**********99*************98 PP
2B395.14.8e-30210324196
                          EEEE-..-HHHHTT-EE--HHH.HTT...................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeF 68 
                          f+k+ tpsdv+k++rlv+pk++ae+h                       +   +++ l +ed  g++W+++++y+++s++yvltkGW++F
  Glyma.02G099500.1.p 210 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqssngvsattiaavtaT---PtaaKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRF 296
                          89*************************9999987777766666553...0445999********************************** PP

                          HHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  69 vkangLkegDfvvFkldgrsefelvvkv 96 
                          vk+++Lk+gD+v F+++   +++l++ +
  Glyma.02G099500.1.p 297 VKEKNLKAGDTVCFHRSTGPDKQLYIDW 324
                          ***************8766777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-981129IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1781137IPR016177DNA-binding domain
CDDcd000185.23E-2681136No hitNo description
SMARTSM003806.6E-2982143IPR001471AP2/ERF domain
PROSITE profilePS5103220.15282137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2082137IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.2E-39205327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-28208324IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-27209313No hitNo description
PROSITE profilePS5086312.76210328IPR003340B3 DNA binding domain
PfamPF023622.2E-27210325IPR003340B3 DNA binding domain
SMARTSM010197.7E-24210328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDAISCMDES TTTESLSISL SPTSSSEKAK PSSMITSSEK VSLSPPPSNR LCRVGSGASA  60
VVDPDGGGSG AEVESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAARAY  120
DIAAQRFRGK DAVTNFKPLA GADDDDGESE FLNSHSKPEI VDMLRKHTYN DELEQSKRSR  180
GVVRRRGSAA AGTANSISGA CFTKAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLQS  240
SNGVSATTIA AVTATPTAAK GVLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK  300
NLKAGDTVCF HRSTGPDKQL YIDWKTRNVV NNEVALFGPV GPVVEPIQMV RLFGVNILKL  360
PGSDTIVGNN NNASGCCNGK RREMELFSLE CSKKPKIIGA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5720732711117DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.312840.0cotyledon| flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G099500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518682.10.0AP2/ERF and B3 domain-containing transcription repressor TEM1
RefseqXP_028201716.10.0AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M51e-145RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A445LM090.0A0A445LM09_GLYSO; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLI1JDW70.0I1JDW7_SOYBN; Uncharacterized protein
STRINGGLYMA02G11060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-136related to ABI3/VP1 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]