PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G109000.1.p
Common NameGLYMA_02G109000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25579.6 Da    PI: 9.2684
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G109000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-18953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+  r  t++kR+ngi+KKA  LS+LCd+++ +i+fs++gk
  Glyma.02G109000.1.p  9 KRLENTNCRLATYAKRKNGIMKKAIGLSILCDVDIILIMFSPSGK 53
                         6899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-19156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.39153IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-21160IPR002100Transcription factor, MADS-box
CDDcd001202.31E-21254No hitNo description
PRINTSPR004045.4E-14323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-161154IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRVKRKIKR LENTNCRLAT YAKRKNGIMK KAIGLSILCD VDIILIMFSP SGKPSLCRRK  60
LSIHIPELIF DLCDQARLLQ THINEIHKRL SYWTDLGKSN SENIQKQQFA SLQCNNPCLK  120
IRDTDIEGST SYSFGSHANY LGSSNKTDIS ISKQENGVLG DMRSTSPMRL QFSYLPNNFN  180
LLNDMDIIIM TLNQGLISTS GPCVVTMFDE HLYTQPSFPP MHIGFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G109000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347742.14e-72agamous-like MADS-box protein AGL30
TrEMBLA0A0R0KVD41e-167A0A0R0KVD4_SOYBN; Uncharacterized protein
STRINGXP_007158646.11e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.12e-37AGAMOUS-like 30