PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G121600.1.p
Common NameGLYMA_02G121600, LOC100811588
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28176.1 Da    PI: 8.5651
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G121600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+ey++
  Glyma.02G121600.1.p  9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYAT 59
                         79***********************************************86 PP
2K-box107.21.8e-35751741100
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y++++ ++++++++e+++ e+++Lk++i+ Lqr++Rh++GedL s+slkeLq+LeqqL +++k+iR+++n+l+ e+i+elqkkek++qee
  Glyma.02G121600.1.p  75 YAERQLVANDSETQENWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLVTGIKNIRTRRNDLMSESISELQKKEKRIQEE 164
                          5677888889999***************************************************************************** PP

                K-box  91 nkaLrkklee 100
                          n++L kk++e
  Glyma.02G121600.1.p 165 NNTLAKKIKE 174
                          *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.31161IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-33293IPR002100Transcription factor, MADS-box
CDDcd002652.96E-40279No hitNo description
PRINTSPR004043.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.7E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.0688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIIFSH KGKLFEYATD  60
SCMEKILERH ERYAYAERQL VANDSETQEN WTIEYTRLKA KIDLLQRNHR HYMGEDLASM  120
SLKELQSLEQ QLVTGIKNIR TRRNDLMSES ISELQKKEKR IQEENNTLAK KIKEKEQAVA  180
QQAAQWEQPN YRVDTSFMPQ QQPLPTSLNI CGNNYCQEAA PELGRNGLDL TLEPLYSCNL  240
GCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21173172MEF2C
5f28_B3e-21173172MEF2C
5f28_C3e-21173172MEF2C
5f28_D3e-21173172MEF2C
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
6bz1_A4e-21174173MEF2 CHIMERA
6bz1_B4e-21174173MEF2 CHIMERA
6bz1_C4e-21174173MEF2 CHIMERA
6bz1_D4e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G121600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0953620.0BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574961.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-115AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLI1JEI80.0I1JEI8_SOYBN; Uncharacterized protein
STRINGGLYMA02G13420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]