PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G125200.5.p
Common NameGLYMA_02G125200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 421aa    MW: 45000.4 Da    PI: 6.9462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G125200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-06367400340
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 
                           +h+ +Er RR++i +++  L++l+P +    sk  sK
  Glyma.02G125200.5.p 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVASK 400
                          58************************98....333555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.48E-5362396No hitNo description
SuperFamilySSF474596.8E-9362410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.414364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-8365402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSDKEKFEVD RNEDHVSYSS GMHSDWRFGG SNLANSSVGF VGLGNNSMNV SRGDLIGSSS  60
CSSASMVDSL SPNYWENPTS SQKLGFCDIN NVHNNGGSSS TVAIRKDGFG FGRVGQDHHG  120
TLEMGWNHAN SMLPNGPVMF PHSLSQFPTD SGFIERAARF SCFSGGNFGD MVNSYGIAQS  180
MGLYGARDAI AGHGLKSVIA GGQSQGGDMN VVEDVPPSVE HLVAAKGSPL KSDRRSEGHV  240
IFQDEGKQSL VRNANESDRA ESSDDGGGQD DSPMLEGTSG EPSSKGLNSK KRKRSGRDGD  300
NDKANGAQEL PSEGAKGNSE NQQKGDQQPI STANKACGKN AKLGSQASDP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVASK FETRKFTMSY CYLCLGITSF  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.353830.0cotyledon| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G125200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574971.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574972.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574973.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574974.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574975.10.0transcription factor bHLH49 isoform X1
RefseqXP_006574976.10.0transcription factor bHLH49 isoform X2
RefseqXP_014622274.10.0transcription factor bHLH49 isoform X1
RefseqXP_028204192.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204197.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204201.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204208.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204215.10.0transcription factor bHLH49-like isoform X1
RefseqXP_028204221.10.0transcription factor bHLH49-like isoform X2
TrEMBLA0A0R0KWK00.0A0A0R0KWK0_SOYBN; Uncharacterized protein
STRINGGLYMA02G13860.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-59bHLH family protein