PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G137400.2.p
Common NameGLYMA_02G137400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 141aa    MW: 16145.9 Da    PI: 9.4744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G137400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-0556951054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         + R ++i +++  L++l+ +      +K + +++L++A+eYI  L
  Glyma.02G137400.2.p 56 KERKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 95
                         789999************999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.0E-945100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6554695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-1147108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003152101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-556100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MIASSFCNAD SMFSREEGID VRKMMEHKRR PCSVDQSSYT SIASKRQKAD LSISTKERKE  60
KIGERIVALQ QLVSPYGKTD TSSVLKEAME YIGFLHKQVK VWPFLLHYAE IIITVHFLVI  120
WFHIPRACVL GPKLCYGFWS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.232011e-167leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G137400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310981e-167KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027919619.16e-76transcription factor bHLH153 isoform X1
SwissprotQ7XJU22e-29BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A445LNN31e-100A0A445LNN3_GLYSO; Transcription factor bHLH153 isoform C
TrEMBLI1JEZ61e-100I1JEZ6_SOYBN; Uncharacterized protein
STRINGGLYMA02G15520.13e-66(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-31bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]