PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G141000.3.p
Common NameGLYMA_02G141000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 314aa    MW: 35387 Da    PI: 10.7033
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G141000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.7e-10289308322
                          -SS-EEEEEEE--TT-SS-E CS
                 WRKY   3 DgynWrKYGqKevkgsefpr 22 
                          D y+WrKYGqK++kgs++pr
  Glyma.02G141000.3.p 289 DDYSWRKYGQKPIKGSPHPR 308
                          99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.2E-17240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.7E-10275308IPR003657WRKY domain
PROSITE profilePS5081112.117282308IPR003657WRKY domain
SuperFamilySSF1182906.93E-8285308IPR003657WRKY domain
PfamPF031061.2E-6289309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEVEQANRV AVESCHRVLS LLSQPRDQVQ HRNLMVETGE AVVRFKKVVS LLHSGMGHAR  60
VRKVKNPQIP FSHQSIFLDN PNCKTINNHH FKNLQFPQTS FPDNSIQELG STIKNSLSLG  120
QPSLELSSNG KSPLHLTQQA SSNHYHFFQQ QQQQQQQRLL LQQQQQQQQQ MKHQAEMMFR  180
RNNSGINLNF DSTSCTPTMS STRSFISSLS IDGSVANLDG SAFHLIGAPH SSDQNSQQHK  240
RKCSARGDEG SLKCGSSARC HCSKKRKHRV KRAIKVPAIS NKLADIPPDD YSWRKYGQKP  300
IKGSPHPRLM RTL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.157480.0pod| root| seed coat| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G141000.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753520.0EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237604.20.0WRKY transcription factor 22
RefseqXP_028205918.10.0probable WRKY transcription factor 21
SwissprotO043362e-93WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A445LPA60.0A0A445LPA6_GLYSO; Putative WRKY transcription factor 21 isoform C
TrEMBLI1JF340.0I1JF34_SOYBN; Uncharacterized protein
STRINGGLYMA02G15920.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-85WRKY DNA-binding protein 21