PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G153600.1.p
Common NameLOC100814096
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 310aa    MW: 33515.1 Da    PI: 9.0447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G153600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.9e-131642127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++ ++C +++rtG C yGdrC+F+H++
  Glyma.02G153600.1.p 16 PGVPNCVYYMRTGVCGYGDRCRFNHPR 42
                         5789*********************96 PP
2zf-CCCH41.32.6e-136387327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C+++++tGtCk+G++CkF+H++
  Glyma.02G153600.1.p 63 EPPCQYYLKTGTCKFGASCKFHHPK 87
                         79*********************96 PP
3zf-CCCH382.8e-12109133327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tG+Ck+G +CkF+H++
  Glyma.02G153600.1.p 109 EKECSYYLKTGQCKFGISCKFHHPQ 133
                          689********************97 PP
4zf-CCCH35.71.4e-11264290127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G  C+++H++
  Glyma.02G153600.1.p 264 PGEPECQYYLRTGDCKFGLACRYHHPR 290
                          5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-61542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1081543IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-91742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-71944IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-62142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9956088IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-66087IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-106387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-66388IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-66586IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549106134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624263291IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5263290IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MWHLTLGGVE SYPERPGVPN CVYYMRTGVC GYGDRCRFNH PRDRAAVAAA VRATGDYPER  60
VGEPPCQYYL KTGTCKFGAS CKFHHPKNGG GYLSQAPLNI YGYPLRLGEK ECSYYLKTGQ  120
CKFGISCKFH HPQPAGTSLP TSAPQFYQQV QSPTVPLPEQ YGGASTSLRV ARPPVLPGSY  180
VQGAYGPVLL SPGVVQFPGW SHYSAPVSPV LSPGTQPAVG ATSLYGVTQL SSPTSAFARP  240
YTPLSSTTGP SGSSLKDRFF PERPGEPECQ YYLRTGDCKF GLACRYHHPR DHIVAPLLSP  300
VGLPLRPVH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.195360.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G153600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518958.10.0zinc finger CCCH domain-containing protein 32
RefseqXP_028207339.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-153C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445LPA90.0A0A445LPA9_GLYSO; Zinc finger CCCH domain-containing protein 32
TrEMBLI1JFH00.0I1JFH0_SOYBN; Uncharacterized protein
STRINGGLYMA02G17250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-145C3H family protein